U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GTF2IP20 general transcription factor IIi pseudogene 20 [ Homo sapiens (human) ]

    Gene ID: 441124, updated on 10-Dec-2024

    Summary

    Official Symbol
    GTF2IP20provided by HGNC
    Official Full Name
    general transcription factor IIi pseudogene 20provided by HGNC
    Primary source
    HGNC:HGNC:51732
    See related
    AllianceGenome:HGNC:51732
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 18.2), bone marrow (RPKM 9.2) and 25 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See GTF2IP20 in Genome Data Viewer
    Location:
    1q42.11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (223951266..223992644, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (223141055..223182396, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (224138968..224180346, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene septin 14 pseudogene 15 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:224136303-224136802 Neighboring gene capicua transcriptional repressor pseudogene 5 Neighboring gene RNA, U6 small nuclear 1319, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224180107-224180730 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224180731-224181352 Neighboring gene septin 7 pseudogene 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:224199262-224199956 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:224199957-224200650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2594 Neighboring gene uncharacterized LOC105373061

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132119.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC138393, AW993327, BE086635, BJ989959, BQ932773, CB122954, DA223298, DA863884, DB081302, DB156368, HY310080

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      223951266..223992644 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      223141055..223182396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)