U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Setl1 SET-like protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 290432, updated on 27-Nov-2024

    Summary

    Official Symbol
    Setl1provided by RGD
    Official Full Name
    SET-like protein 1provided by RGD
    Primary source
    RGD:727855
    See related
    AllianceGenome:RGD:727855
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Set; Setsip; RGD727855
    Annotation information
    Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Setl1 in Genome Data Viewer
    Location:
    15q21
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (80920840..80921698, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (74512909..74513767, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (82080667..82081525, complement)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene Ski proto-oncogene, pseudogene 1 Neighboring gene uncharacterized LOC134482001 Neighboring gene dachshund family transcription factor 1 Neighboring gene high mobility group nucleosomal binding domain 4, pseudogene 4 Neighboring gene eukaryotic translation initiation factor 1, pseudogene 4

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    SET-like protein
    Names
    LRRGR00002
    SET translocation
    SET translocation-like 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_194353.2NP_919334.2  SET-like protein

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1, coding) represents the functional allele that is not present in some strains, including the strain of the reference genome.
      Source sequence(s)
      AY366388, JAXUCZ010000015
      UniProtKB/TrEMBL
      Q6UN82
      Conserved Domains (1) summary
      cl08298
      Location:57234
      NAP; Nucleosome assembly protein (NAP)

    RNA

    1. NR_171897.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1, non-coding) contains a premature stop codon, and represents the non-functional allele present in some strains, including the strain of the reference genome.
      Source sequence(s)
      JAXUCZ010000015

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      80920840..80921698 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)