C1h16orf54 similar to human chromosome 16 open reading frame 54 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: C1h16orf54provided by RGD
Official Full Name: similar to human chromosome 16 open reading frame 54provided by RGD
Primary source: RGD:1564503
See related: EnsemblRapid:ENSRNOG00000016978 AllianceGenome:RGD:1564503
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be located in membrane. Orthologous to human C16orf54 (chromosome 16 open reading frame 54). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Thymus (RPKM 364.4), Spleen (RPKM 120.7) and 1 other tissue See more
Orthologs: human mouse all
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Genomic context

Location:: 1q37

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (191132972..191135653)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (181702447..181705128)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (198528569..198531585)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transmembrane protein C16orf54 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001025001.1 → NP_001020172.1 transmembrane protein C16orf54 homolog

See identical proteins and their annotated locations for NP_001020172.1

Status: PROVISIONAL

Source sequence(s)

BC091216

UniProtKB/Swiss-Prot

Q5BK39

UniProtKB/TrEMBL

A6I9L3

Conserved Domains (1) summary

pfam15755
Location:1 → 224

DUF4689; Domain of unknown function (DUF4689)