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    Iqck IQ motif containing K [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100909537, updated on 9-Dec-2024

    Summary

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    Symbol
    Iqckprovided by RGD
    Full Name
    IQ motif containing Kprovided by RGD
    Primary source
    RGD:6502881
    See related
    EnsemblRapid:ENSRNOG00000036758 AllianceGenome:RGD:6502881
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human IQCK (IQ motif containing K). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 107.1), Heart (RPKM 37.1) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Iqck in Genome Data Viewer
    Location:
    1q35
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (182630678..182748325)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (173199308..173316982)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (188571930..188690184)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene VPS35 endosomal protein sorting factor like Neighboring gene small nucleolar RNA SNORA24 Neighboring gene small nucleolar RNA SNORA44 Neighboring gene lysine-rich nucleolar protein 1 Neighboring gene uncharacterized LOC134485172 Neighboring gene uncharacterized LOC102550985 Neighboring gene G protein-coupled receptor, class C, group 5, member B Neighboring gene uncharacterized LOC134485173 Neighboring gene G protein-coupled receptor 139

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    IQ domain-containing protein K
    Names
    IQ domain-containing protein K-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401714.1 → NP_001388643.1  IQ domain-containing protein K

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      D3ZTH1
      Related
      ENSRNOP00000080063.2, ENSRNOT00000105879.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      182630678..182748325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006230149.5 → XP_006230211.1  IQ domain-containing protein K isoform X1

      See identical proteins and their annotated locations for XP_006230211.1

      UniProtKB/TrEMBL
      A0A8I5ZNX3, D3ZTH1
      Related
      ENSRNOP00000051971.5, ENSRNOT00000055096.6
      Conserved Domains (1) summary
      pfam00612
      Location:218 → 235
      IQ; IQ calmodulin-binding motif

    2. XM_063283526.1 → XP_063139596.1  IQ domain-containing protein K isoform X8

    3. XM_063283413.1 → XP_063139483.1  IQ domain-containing protein K isoform X6

    4. XM_039101165.2 → XP_038957093.1  IQ domain-containing protein K isoform X4

    5. XM_006230150.4 → XP_006230212.1  IQ domain-containing protein K isoform X2

      See identical proteins and their annotated locations for XP_006230212.1

    6. XM_063283355.1 → XP_063139425.1  IQ domain-containing protein K isoform X5

    7. XM_063283313.1 → XP_063139383.1  IQ domain-containing protein K isoform X3

    8. XM_063283469.1 → XP_063139539.1  IQ domain-containing protein K isoform X7

    9. XM_039101167.2 → XP_038957095.1  IQ domain-containing protein K isoform X7

      Conserved Domains (1) summary
      cd22307
      Location:120 → 137
      Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif

    10. XM_063283495.1 → XP_063139565.1  IQ domain-containing protein K isoform X7

    RNA

    1. XR_010064577.1 RNA Sequence

    2. XR_010064593.1 RNA Sequence

    3. XR_005499407.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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