U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    plekhj1.L pleckstrin homology domain containing J1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380583, updated on 4-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    plekhj1.L
    Official Full Name
    pleckstrin homology domain containing J1 L homeolog
    Primary source
    Xenbase:XB-GENE-6253414
    Locus tag
    XELAEV_18006339mg
    See related
    EnsemblRapid:ENSXLAG00005021272 AllianceGenome:Xenbase:XB-GENE-6253414
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    gnrpx; plekhj1
    Summary
    Orthologous to human PLEKHJ1 (pleckstrin homology domain containing J1). [provided by Alliance of Genome Resources, Jan 2025]
    Annotation information
    Annotation category: partial on reference assembly
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See plekhj1.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (111947787..111965342)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (99892134..99909874)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene anti-Mullerian hormone L homeolog Neighboring gene splicing factor 3a subunit 2 L homeolog Neighboring gene DOT1-like histone H3K79 methyltransferase L homeolog Neighboring gene uncharacterized LOC108712868

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC52877, MGC132346

    General protein information

    Go to the top of the page Help
    Preferred Names
    pleckstrin homology domain-containing family J member 1
    Names
    PH domain-containing family J member 1
    likely ortholog of mouse guanine nucleotide releasing protein x

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087420.1 → NP_001080889.1  pleckstrin homology domain-containing family J member 1

      See identical proteins and their annotated locations for NP_001080889.1

      Status: PROVISIONAL

      Source sequence(s)
      BC108866
      UniProtKB/Swiss-Prot
      Q801R7
      UniProtKB/TrEMBL
      A0A974DZQ2
      Related
      ENSXLAP00005062391.1, ENSXLAT00005063845.1
      Conserved Domains (2) summary
      cd13258
      Location:1 → 112
      PH_PLEKHJ1; Pleckstrin homology domain containing, family J member 1 Pleckstrin homology (PH) domain
      pfam00169
      Location:25 → 108
      PH; PH domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      111947787..111965342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q801R7.1 GenPept UniProtKB/Swiss-Prot:Q801R7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.