U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    larp1.L La ribonucleoprotein domain family member 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 734413, updated on 4-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    larp1.L
    Official Full Name
    La ribonucleoprotein domain family member 1 L homeolog
    Primary source
    Xenbase:XB-GENE-6039438
    Locus tag
    XELAEV_18016945mg
    See related
    EnsemblRapid:ENSXLAG00005000923 AllianceGenome:Xenbase:XB-GENE-6039438
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    larp1
    Summary
    Predicted to enable RNA cap binding activity. Predicted to act upstream of or within mRNA stabilization. Predicted to be part of ribonucleoprotein complex. Orthologous to human LARP1 (La ribonucleoprotein 1, translational regulator). [provided by Alliance of Genome Resources, Jan 2025]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See larp1.L in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (28127591..28174388, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (15192783..15239704, complement)

    Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 8 L homeolog Neighboring gene fatty acid hydroxylase domain containing 2 L homeolog Neighboring gene uncharacterized LOC121401429 Neighboring gene uncharacterized LOC108710837 Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC98945

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA stabilization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    La ribonucleoprotein domain family member 1 L homeolog; la ribonucleoprotein domain family member 1 L homeolog
    Names
    La ribonucleoprotein domain family, member 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001095894.2 → NP_001089363.1  La ribonucleoprotein domain family member 1 L homeolog

      See identical proteins and their annotated locations for NP_001089363.1

      Status: PROVISIONAL

      Source sequence(s)
      BC093491
      UniProtKB/TrEMBL
      A0A974DCQ2, Q566K4
      Related
      ENSXLAP00005002774.1, ENSXLAT00005002826.1
      Conserved Domains (2) summary
      smart00684
      Location:851 → 889
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cl02755
      Location:323 → 395
      LAM; LA motif RNA-binding domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      28127591..28174388 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018251204.1 → XP_018106693.1  la ribonucleoprotein domain family member 1 L homeolog isoform X3

      UniProtKB/TrEMBL
      A0A8J0UNY0

    2. XM_041585248.1 → XP_041441182.1  la ribonucleoprotein domain family member 1 L homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J1MHI5
      Related
      ENSXLAP00005002783.1, ENSXLAT00005002835.1
      Conserved Domains (2) summary
      smart00684
      Location:872 → 910
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cl02755
      Location:344 → 416
      LAM; LA motif RNA-binding domain

    3. XM_041585247.1 → XP_041441181.1  la ribonucleoprotein domain family member 1 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J1MIH1
      Conserved Domains (2) summary
      smart00684
      Location:876 → 914
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cl02755
      Location:348 → 420
      LAM; LA motif RNA-binding domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.