Zfp954 zinc finger protein 954 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Zfp954provided by MGI
Official Full Name: zinc finger protein 954provided by MGI
Primary source: MGI:MGI:1917764
See related: Ensembl:ENSMUSG00000062116 AllianceGenome:MGI:1917764
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 8030437F07; 5730403M16Rik
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including early conceptus; genitourinary system; nervous system; and sensory organ. [provided by Alliance of Genome Resources, Dec 2024]
Expression: Ubiquitous expression in CNS E18 (RPKM 6.2), large intestine adult (RPKM 5.6) and 28 other tissues See more
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Genomic context

Location:: 7 A1; 7 4.13 cM

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	7	NC_000073.7 (7117682..7124475, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	7	NC_000073.6 (7114683..7121476, complement)

Chromosome 7 - NC_000073.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC232853

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_172738.3 → NP_766326.2 uncharacterized protein LOC232853

See identical proteins and their annotated locations for NP_766326.2

Status: VALIDATED

Source sequence(s)

AK033116, BC055688, BY124760, BY626368

Consensus CDS

CCDS51991.1

UniProtKB/TrEMBL

Q7TNU5

Related

ENSMUSP00000072585.4, ENSMUST00000056246.8

Conserved Domains (6) summary

smart00349
Location:42 → 95

KRAB; krueppel associated box

COG5048
Location:252 → 387

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:200 → 220

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:364 → 386

zf-C2H2; Zinc finger, C2H2 type

pfam01352
Location:42 → 81

KRAB; KRAB box

pfam13465
Location:241 → 265

zf-H2C2_2; Zinc-finger double domain