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    1700102P08Rik RIKEN cDNA 1700102P08 gene [ Mus musculus (house mouse) ]

    Gene ID: 112418, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1700102P08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700102P08 geneprovided by MGI
    Primary source
    MGI:MGI:2148248
    See related
    Ensembl:ENSMUSG00000032611 AllianceGenome:MGI:2148248
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Involved in spermatogenesis. Is expressed in spermatocyte and testis. Orthologous to human C3orf62 (chromosome 3 open reading frame 62). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 17.6) and CNS E18 (RPKM 0.8) See more
    Orthologs
    human all
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    Genomic context

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    See 1700102P08Rik in Genome Data Viewer
    Location:
    9 F2; 9 59.3 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (108270023..108275416)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (108392824..108411440)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_25205 Neighboring gene STARR-positive B cell enhancer ABC_E10585 Neighboring gene glutathione peroxidase 1 Neighboring gene ubiquitin specific peptidase 4 (proto-oncogene) Neighboring gene ribosomal protein S2, pseudogene 11 Neighboring gene interactor of HORMAD1 1 Neighboring gene predicted gene, 25456 Neighboring gene cDNA sequence BC048562

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The male pachynema-specific protein MAPS drives phase separation in vitro and regulates sex body formation and chromatin behaviors in vivo. Lin Z, et al. Cell Rep, 2024 Jan 23. PMID 38175751
    2. The testis-specific gene 1700102P08Rik is essential for male fertility. Wu XL, et al. Mol Reprod Dev, 2020 Feb. PMID 31930642
    3. The male germline-specific protein MAPS is indispensable for pachynema progression and fertility. Li M, et al. Proc Natl Acad Sci U S A, 2021 Feb 23. PMID 33602822, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The testis-specific gene 1700102P08Rik is essential for male fertility.
      Title: The testis-specific gene 1700102P08Rik is essential for male fertility.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C3orf62 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053216.3 → NP_444446.2  uncharacterized protein C3orf62 homolog

      See identical proteins and their annotated locations for NP_444446.2

      Status: VALIDATED

      Source sequence(s)
      AC161260
      Consensus CDS
      CCDS23524.1
      UniProtKB/Swiss-Prot
      A0A0R4J0D7, Q6P8V6, Q9D9C7
      Related
      ENSMUSP00000035234.5, ENSMUST00000035234.6
      Conserved Domains (1) summary
      pfam15830
      Location:1 → 247
      DUF4712; Domain of unknown function (DUF4712)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      108270023..108275416
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511628.2 → XP_006511691.1  uncharacterized protein C3orf62 homolog isoform X1

      Conserved Domains (1) summary
      pfam15830
      Location:7 → 253
      DUF4712; Domain of unknown function (DUF4712)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D9C7.2 GenPept UniProtKB/Swiss-Prot:Q9D9C7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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