U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Dubr Dppa2 upstream binding RNA [ Mus musculus (house mouse) ]

    Gene ID: 68190, updated on 9-Dec-2024

    Summary

    Official Symbol
    Dubrprovided by MGI
    Official Full Name
    Dppa2 upstream binding RNAprovided by MGI
    Primary source
    MGI:MGI:1915440
    See related
    AllianceGenome:MGI:1915440
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dum; 5330426P16Rik
    Summary
    Acts upstream of or within several processes, including generation of neurons; negative regulation of macromolecule biosynthetic process; and protein stabilization. Is active in cytoplasm and nucleus. Is expressed in central nervous system and dorsal root ganglion. Orthologous to human DUBR (DPPA2 upstream binding RNA). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in lung adult (RPKM 5.1), genital fat pad adult (RPKM 3.3) and 24 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Dubr in Genome Data Viewer
    Location:
    16 B5; 16 31.5 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (50547114..50553136, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (50726751..50732773, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930542D17 gene Neighboring gene coiled-coil domain containing 54 Neighboring gene protease (prosome, macropain) 26S subunit, ATPase 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_40994 Neighboring gene STARR-positive B cell enhancer ABC_E7457 Neighboring gene STARR-positive B cell enhancer ABC_E1491 Neighboring gene microRNA 6363 Neighboring gene STARR-seq mESC enhancer starr_40996 Neighboring gene RIKEN cDNA 1700116B05 gene Neighboring gene predicted gene, 24925

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Other Names

    • developmental pluripotency-associated 2 upstream binding muscle lncRNA

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-containing complex binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028300.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK045752, AK137010, CJ061177

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      50547114..50553136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)