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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001316753.2 → NP_001303682.1 HMG domain-containing protein 4 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) contains an alternate exon in the 5' end compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
- Source sequence(s)
-
AL603864
- UniProtKB/TrEMBL
-
Q80Y32
- Conserved Domains (2) summary
-
- cd00084
Location:291 → 354
- HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
- pfam13775
Location:1 → 123
- DUF4171; Domain of unknown function (DUF4171)
-
NM_001316754.2 → NP_001303683.1 HMG domain-containing protein 4 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has an alternate 5' exon in place of the first five exons compared to variant 1. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AL603864
- Consensus CDS
-
CCDS85564.1
- UniProtKB/TrEMBL
- Q8BTT5, Q8R579
- Related
- ENSMUSP00000105566.2, ENSMUST00000109940.2
- Conserved Domains (1) summary
-
- cd00084
Location:3 → 66
- HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
-
NM_001415023.1 → NP_001401952.1 HMG domain-containing protein 4 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL603864
-
NM_001415024.1 → NP_001401953.1 HMG domain-containing protein 4 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL603864
-
NM_001415025.1 → NP_001401954.1 HMG domain-containing protein 4 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL603864
-
NM_001415026.1 → NP_001401955.1 HMG domain-containing protein 4 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL603864
-
NM_001415027.1 → NP_001401956.1 HMG domain-containing protein 4 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL603864
-
NM_001415028.1 → NP_001401957.1 HMG domain-containing protein 4 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AL603864
- UniProtKB/TrEMBL
-
Q8R579
-
NM_178017.3 → NP_821136.1 HMG domain-containing protein 4 isoform 1
See identical proteins and their annotated locations for NP_821136.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AL603864
- Consensus CDS
-
CCDS22422.1
- UniProtKB/TrEMBL
-
Q80Y32
- Related
- ENSMUSP00000045126.8, ENSMUST00000041759.14
- Conserved Domains (2) summary
-
- cd00084
Location:400 → 463
- HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
- pfam13775
Location:107 → 225
- DUF4171; Domain of unknown function (DUF4171)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000074.7 Reference GRCm39 C57BL/6J
- Range
-
75720305..75758606
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)