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    XEG113 xyloglucanase 113 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818128, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XEG113
    Official Full Name
    xyloglucanase 113
    Primary source
    TAIR:AT2G35610
    Locus tag
    AT2G35610
    See related
    Araport:AT2G35610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GT77; T20F21.19; T20F21_19; xyloglucanase 113
    Summary
    Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.
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    Genomic context

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    See XEG113 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (14947343..14951372, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene BREVIS RADIX-like 1 Neighboring gene SWIB/MDM2 domain superfamily protein Neighboring gene copper amine oxidase family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of plant cell wall mutants by means of a forward chemical genetic approach using hydrolases. Gille S, et al. Proc Natl Acad Sci U S A, 2009 Aug 25. PMID 19667208, Free PMC Article
    2. O-glycosylated cell wall proteins are essential in root hair growth. Velasquez SM, et al. Science, 2011 Jun 17. PMID 21680836
    3. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    4. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    5. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_179919.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables arabinosyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell wall pectin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein glycosylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair cell development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi trans cisterna HDA PubMed 
    located_in endosome HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    xyloglucanase 113
    NP_850250.1
    • xyloglucanase 113 (XEG113); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G70630.1); Has 390 Blast hits to 386 proteins in 36 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14947343..14951372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179919.2 → NP_850250.1  xyloglucanase 113 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850250.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFT3, Q8VXZ5, Q9ZQN4
      UniProtKB/TrEMBL
      A0A178W347, A0A5S9X472, A0A654F9S2
      Conserved Domains (1) summary
      pfam03407
      Location:159 → 383
      Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VXZ5.1

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