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    Rhamnogalacturonate lyase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816793, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rhamnogalacturonate lyase family protein
    Primary source
    TAIR:AT2G22620
    Locus tag
    AT2G22620
    See related
    Araport:AT2G22620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9I22.6; T9I22_6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    16
    Sequence:
    Chromosome: 2; NC_003071.7 (9604772..9610661, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNA-binding KH domain-containing protein Neighboring gene Di-glucose binding protein with Kinesin motor domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene AGAMOUS-like 17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202649.1
    NM_001335802.1
    NM_001335803.1
    NM_001335804.1
    NM_127827.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables rhamnogalacturonan endolyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rhamnogalacturonate lyase family protein
    NP_001189578.1
    • Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G37950.1).
    NP_179847.1
    • Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G37950.1); Has 306 Blast hits to 289 proteins in 68 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 87; Plants - 167; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9604772..9610661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127827.4 → NP_179847.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179847.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EWN3, Q9ZQ51
      Conserved Domains (3) summary
      cd10316
      Location:374 → 473
      RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
      pfam06045
      Location:39 → 243
      Rhamnogal_lyase; Rhamnogalacturonate lyase family
      pfam14683
      Location:483 → 671
      CBM-like; Polysaccharide lyase family 4, domain III

    2. NM_001202649.1 → NP_001189578.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189578.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EWN3, F4IJK8
      Conserved Domains (3) summary
      cd10316
      Location:294 → 393
      RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
      cd10320
      Location:61 → 261
      RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
      pfam14683
      Location:403 → 591
      CBM-like; Polysaccharide lyase family 4, domain III

    3. NM_001335802.1 → NP_001325395.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EWN3, Q9ZQ51

    4. NM_001335803.1 → NP_001325397.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B357, A0A5S9X083, A0A654EWN3, Q6NKW8

    5. NM_001335804.1 → NP_001325396.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B326
    Nucleotide Protein
    Heading Accession and Version

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