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    Mannose-binding lectin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841629, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Mannose-binding lectin superfamily protein
    Primary source
    TAIR:AT1G52000
    Locus tag
    AT1G52000
    See related
    Araport:AT1G52000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5F19.6; F5F19_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (19333088..19336135, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Insulinase (Peptidase family M16) protein Neighboring gene O-methyltransferase family protein Neighboring gene pseudo Neighboring gene pseudo Neighboring gene myrosinase-binding protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RIN4 functions with plasma membrane H+-ATPases to regulate stomatal apertures during pathogen attack. Liu J, et al. PLoS Biol, 2009 Jun 30. PMID 19564897, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333521.1
    NM_104081.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Mannose-binding lectin superfamily protein
    NP_175612.1
    • Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 167771 Blast hits to 59831 proteins in 3132 species: Archae - 576; Bacteria - 64709; Metazoa - 36025; Fungi - 10183; Plants - 11804; Viruses - 2110; Other Eukaryotes - 42364 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19333088..19336135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104081.4 → NP_175612.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175612.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZU23
      UniProtKB/TrEMBL
      A0A654EHP8
      Conserved Domains (3) summary
      smart00915
      Location:2 → 126
      Jacalin; Jacalin-like lectin domain
      TIGR00927
      Location:181 → 434
      2A1904; K+-dependent Na+/Ca+ exchanger
      pfam01419
      Location:595 → 727
      Jacalin; Jacalin-like lectin domain

    2. NM_001333521.1 → NP_001320196.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZU23
      UniProtKB/TrEMBL
      A0A654EHP8
      Conserved Domains (3) summary
      smart00915
      Location:2 → 126
      Jacalin; Jacalin-like lectin domain
      TIGR00927
      Location:181 → 434
      2A1904; K+-dependent Na+/Ca+ exchanger
      pfam01419
      Location:595 → 727
      Jacalin; Jacalin-like lectin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZU23.1

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