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    hypothetical protein (DUF1644) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838114, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF1644)
    Primary source
    TAIR:AT1G15430
    Locus tag
    AT1G15430
    See related
    Araport:AT1G15430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.39; F9L1_39
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (5304098..5306087)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene aspartate-glutamate racemase family Neighboring gene late embryogenesis abundant-like protein Neighboring gene WD repeat protein Neighboring gene periodic tryptophan protein 2 Neighboring gene tRNA-Trp Neighboring gene HCO3- transporter family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101413.4
    NM_202106.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF1644)
    NP_563977.1
    • Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 273 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973835.1
    • Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5304098..5306087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101413.4 → NP_563977.1  hypothetical protein (DUF1644) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563977.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1T8, A0A654EAV6, Q9C5E6
      Conserved Domains (1) summary
      pfam07800
      Location:49 → 187
      DUF1644; Protein of unknown function (DUF1644)

    2. NM_202106.2 → NP_973835.1  hypothetical protein (DUF1644) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973835.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1T8, A0A654EAV6, Q9C5E6
      Conserved Domains (1) summary
      pfam07800
      Location:49 → 187
      DUF1644; Protein of unknown function (DUF1644)
    Nucleotide Protein
    Heading Accession and Version

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