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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843814, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT1G74750
    Locus tag
    AT1G74750
    See related
    Araport:AT1G74750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25A4.28; F25A4_28
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (28085753..28089642)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1118) Neighboring gene ncRNA Neighboring gene calcium-dependent protein kinase 30 Neighboring gene zinc ion binding protein Neighboring gene Nodulin-like / Major Facilitator Superfamily protein Neighboring gene catalytics Neighboring gene Galactosyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis pentatricopeptide repeat protein, SUPPRESSOR OF VARIEGATION7, is required for FtsH-mediated chloroplast biogenesis. Liu X, et al. Plant Physiol, 2010 Dec. PMID 20935174, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334663.1
    NM_106133.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_001319382.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G18900.2); Has 54690 Blast hits to 14739 proteins in 296 species: Archae - 3; Bacteria - 64; Metazoa - 559; Fungi - 736; Plants - 51726; Viruses - 0; Other Eukaryotes - 1602 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28085753..28089642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334664.1 → NP_001323335.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSF9
      UniProtKB/TrEMBL
      A0A654ENZ3
      Conserved Domains (3) summary
      smart00463
      Location:753 → 834
      SMR; Small MutS-related domain
      PLN03218
      Location:349 → 660
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:396 → 423
      PPR; PPR repeat [structural motif]

    2. NM_001334665.1 → NP_001323334.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSF9
      UniProtKB/TrEMBL
      A0A654ENZ3
      Conserved Domains (3) summary
      smart00463
      Location:753 → 834
      SMR; Small MutS-related domain
      PLN03218
      Location:349 → 660
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:396 → 423
      PPR; PPR repeat [structural motif]

    3. NM_001334663.1 → NP_001319382.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSF9
      UniProtKB/TrEMBL
      A0A654ENZ3
      Conserved Domains (3) summary
      smart00463
      Location:753 → 834
      SMR; Small MutS-related domain
      PLN03218
      Location:349 → 660
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:396 → 423
      PPR; PPR repeat [structural motif]

    4. NM_106133.2 → NP_177613.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177613.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSF9
      UniProtKB/TrEMBL
      A0A654ENZ3
      Conserved Domains (3) summary
      smart00463
      Location:753 → 834
      SMR; Small MutS-related domain
      PLN03218
      Location:349 → 660
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:396 → 423
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SSF9.1

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