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    ATERDJ2A DnaJ / Sec63 Brl domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844334, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATERDJ2A
    Official Full Name
    DnaJ / Sec63 Brl domains-containing protein
    Primary source
    TAIR:AT1G79940
    Locus tag
    AT1G79940
    See related
    Araport:AT1G79940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K16.10; F19K16_10
    Summary
    J domain protein localized in ER membrane. Mutants have defective pollen germination.
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    Genomic context

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    See ATERDJ2A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (30069519..30073440)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Heat shock protein 70 (Hsp 70) family protein Neighboring gene heat shock protein 91 Neighboring gene RAD3-like DNA-binding helicase protein Neighboring gene ovate family protein 14 Neighboring gene ncRNA Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtTPR7 is a chaperone-docking protein of the Sec translocon in Arabidopsis. Schweiger R, et al. J Cell Sci, 2012 Nov 1. PMID 22899711
    2. Arabidopsis thaliana has a set of J proteins in the endoplasmic reticulum that are conserved from yeast to animals and plants. Yamamoto M, et al. Plant Cell Physiol, 2008 Oct. PMID 18718935
    3. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    4. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    5. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036229.3
    NM_001124151.1
    NM_001198516.1
    NM_106643.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    DnaJ / Sec63 Brl domains-containing protein
    NP_001031306.2
    • ATERDJ2A; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DnaJ / Sec63 Brl domains-containing protein (TAIR:AT4G21180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001117623.1
    • ATERDJ2A; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DnaJ / Sec63 Brl domains-containing protein (TAIR:AT4G21180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001185445.1
    • ATERDJ2A; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, integral to endoplasmic reticulum membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DnaJ / Sec63 Brl domains-containing protein (TAIR:AT4G21180.1).
    NP_178112.2
    • ATERDJ2A; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DnaJ / Sec63 Brl domains-containing protein (TAIR:AT4G21180.1); Has 25269 Blast hits to 23100 proteins in 3289 species: Archae - 158; Bacteria - 9141; Metazoa - 5761; Fungi - 2418; Plants - 2108; Viruses - 143; Other Eukaryotes - 5540 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30069519..30073440
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036229.3 → NP_001031306.2  DnaJ / Sec63 Brl domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031306.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT48, Q9CA96, Q9SSD9
      UniProtKB/TrEMBL
      A0A178W1G8, A0A5S9WVW7
      Conserved Domains (2) summary
      smart00611
      Location:207 → 605
      SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
      pfam00226
      Location:99 → 161
      DnaJ; DnaJ domain

    2. NM_001198516.1 → NP_001185445.1  DnaJ / Sec63 Brl domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185445.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HQE1
      Conserved Domains (2) summary
      smart00611
      Location:207 → 533
      SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
      pfam00226
      Location:99 → 161
      DnaJ; DnaJ domain

    3. NM_106643.5 → NP_178112.2  DnaJ / Sec63 Brl domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178112.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT48, Q9CA96, Q9SSD9
      UniProtKB/TrEMBL
      A0A178W1G8, A0A5S9WVW7
      Conserved Domains (2) summary
      smart00611
      Location:207 → 605
      SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
      pfam00226
      Location:99 → 161
      DnaJ; DnaJ domain

    4. NM_001124151.1 → NP_001117623.1  DnaJ / Sec63 Brl domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117623.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT48, Q9CA96, Q9SSD9
      UniProtKB/TrEMBL
      A0A178W1G8, A0A5S9WVW7
      Conserved Domains (2) summary
      smart00611
      Location:207 → 605
      SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
      pfam00226
      Location:99 → 161
      DnaJ; DnaJ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WT48.1

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