U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    FRS4 FAR1-related sequence 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843965, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    FRS4
    Official Full Name
    FAR1-related sequence 4
    Primary source
    TAIR:AT1G76320
    Locus tag
    AT1G76320
    See related
    Araport:AT1G76320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CHLOROPLAST DIVISION MUTANT 25; CPD25; F15M4.18; FAR1-related sequence 4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See FRS4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (28631223..28634588)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene snRNP core protein SMD3 Neighboring gene CYCLIN B2;4 Neighboring gene tRNA-Ser Neighboring gene golgi nucleotide sugar transporter 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis FRS4/CPD25 and FHY3/CPD45 work cooperatively to promote the expression of the chloroplast division gene ARC5 and chloroplast division. Gao Y, et al. Plant J, 2013 Sep. PMID 23662592
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FRS4/CPD25 and FHY3/CPD45 function as a heterodimer that cooperatively activates ARC5.
      Title: Arabidopsis FRS4/CPD25 and FHY3/CPD45 work cooperatively to promote the expression of the chloroplast division gene ARC5 and chloroplast division.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001036209.2
    NM_001334723.1
    NM_106282.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    FAR1-related sequence 4
    NP_001031286.1
    • FAR1-related sequence 4 (FRS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_177759.1
    • FAR1-related sequence 4 (FRS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1); Has 1570 Blast hits to 1410 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 91; Plants - 1475; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28631223..28634588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334722.1 → NP_001320820.1  FAR1-related sequence 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLY2, A0A1P8AP14, A0A384KV74
      Conserved Domains (1) summary
      PLN03097
      Location:1 → 632
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

    2. NM_106282.5 → NP_177759.1  FAR1-related sequence 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177759.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I2C4, Q2V4C5, Q6NQJ7, Q9SFW7, Q9SGQ3
      UniProtKB/TrEMBL
      A0A178WNR6, A0A5S9WUT1
      Conserved Domains (1) summary
      PLN03097
      Location:1 → 728
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

    3. NM_001334723.1 → NP_001320821.1  FAR1-related sequence 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I2C4, Q2V4C5, Q6NQJ7, Q9SFW7, Q9SGQ3
      UniProtKB/TrEMBL
      A0A178WNR6, A0A5S9WUT1
      Conserved Domains (1) summary
      PLN03097
      Location:1 → 728
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

    4. NM_001036209.2 → NP_001031286.1  FAR1-related sequence 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031286.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQJ7
      Conserved Domains (4) summary
      PLN03097
      Location:1 → 726
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam04434
      Location:490 → 526
      SWIM; SWIM zinc finger
      pfam03101
      Location:12 → 97
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:217 → 311
      MULE; MULE transposase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NQJ7.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools