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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843581, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT1G72490
    Locus tag
    AT1G72490
    See related
    Araport:AT1G72490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10D10.4; T10D10_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (27288900..27291107, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene exocyst subunit exo70 family protein D1 Neighboring gene Lung seven transmembrane receptor family protein Neighboring gene inter alpha-trypsin inhibitor, heavy chain-like protein Neighboring gene DUF1677 family protein (DUF1677)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtDRO1 is nuclear localized in root tips under native conditions and impacts auxin localization. Waite JM, et al. Plant Mol Biol, 2020 May. PMID 32130643, Free PMC Article
    2. DRO1 influences root system architecture in Arabidopsis and Prunus species. Guseman JM, et al. Plant J, 2017 Mar. PMID 28029738
    3. Light modulates the gravitropic responses through organ-specific PIFs and HY5 regulation of LAZY4 expression in Arabidopsis. Yang P, et al. Proc Natl Acad Sci U S A, 2020 Aug 4. PMID 32690706, Free PMC Article
    4. LAZY Genes Mediate the Effects of Gravity on Auxin Gradients and Plant Architecture. Yoshihara T, et al. Plant Physiol, 2017 Oct. PMID 28821594, Free PMC Article
    5. The Arabidopsis LAZY1 Family Plays a Key Role in Gravity Signaling within Statocytes and in Branch Angle Control of Roots and Shoots. Taniguchi M, et al. Plant Cell, 2017 Aug. PMID 28765510, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Light modulates the gravitropic responses through organ-specific PIFs and HY5 regulation of LAZY4 expression in Arabidopsis.
      Title: Light modulates the gravitropic responses through organ-specific PIFs and HY5 regulation of LAZY4 expression in Arabidopsis.
    2. Data suggest that nuclear localization may be important for AtDRO1 function and suggests a more nuanced role for DRO1 in regulating auxin-mediated changes in lateral branch angle. [AtDRO1]
      Title: AtDRO1 is nuclear localized in root tips under native conditions and impacts auxin localization.
    3. LZY1, LZY2, and their paralog AtDRO1/AtNGR2/LZY3 are redundantly involved in both shoot and root gravitropism and that their corresponding proteins play a key role in controlling lateral auxin flow after the reorientation of statocytes. [LZY3]
      Title: The Arabidopsis LAZY1 Family Plays a Key Role in Gravity Signaling within Statocytes and in Branch Angle Control of Roots and Shoots.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001334534.1
    NM_001334535.1
    NM_105908.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within gravitropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root branching IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of growth IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in amyloplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_177393.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27288900..27291107 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105908.4 → NP_177393.2  uncharacterized protein AT1G72490 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177393.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5XVG3, Q9C9E7
      UniProtKB/TrEMBL
      A0A178WGB7

    2. NM_001334534.1 → NP_001322368.1  uncharacterized protein AT1G72490 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5XVG3, Q9C9E7
      UniProtKB/TrEMBL
      A0A178WGB7

    3. NM_001334535.1 → NP_001322369.1  uncharacterized protein AT1G72490 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGB7, A0A1P8ATW2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XVG3.1

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