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    OTP87 pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843800, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OTP87
    Official Full Name
    pentatricopeptide (PPR) repeat-containing protein
    Primary source
    TAIR:AT1G74600
    Locus tag
    AT1G74600
    See related
    Araport:AT1G74600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1M20.28; F1M20_28; organelle transcript processing 87
    Summary
    OTP87 appears to act as a trans-factor involved in the recognition of the two editing sites in mitochondrial genes nad7-C24 and atp1-C1178.
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    Genomic context

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    See OTP87 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (28024840..28027869, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Leu Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene glutathione S-transferase TAU 10 Neighboring gene tRNA-Leu Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria. Hammani K, et al. J Biol Chem, 2011 Jun 17. PMID 21504904, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OTP87 is a pentatricopeptide repeat protein essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria. [OTP87]
      Title: The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    • At1g74600_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At1g74600_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_106119.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial mRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein
    NP_177599.1
    • pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 58662 Blast hits to 14057 proteins in 256 species: Archae - 2; Bacteria - 61; Metazoa - 165; Fungi - 118; Plants - 57459; Viruses - 0; Other Eukaryotes - 857 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28024840..28027869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106119.2 → NP_177599.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177599.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CA56
      UniProtKB/TrEMBL
      A0A178W410, A0A5S9WUE0
      Conserved Domains (3) summary
      PLN03077
      Location:249 → 895
      PLN03077; Protein ECB2; Provisional
      PLN03081
      Location:83 → 361
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:720 → 747
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CA56.1

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