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    ELM2 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837947, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ELM2 domain-containing protein
    Primary source
    TAIR:AT1G13880
    Locus tag
    AT1G13880
    See related
    Araport:AT1G13880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ELM2; F16A14.9; F16A14_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (4748831..4751234)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene QUASIMODO2 LIKE 1 Neighboring gene KTI12-like, chromatin associated protein Neighboring gene soluble N-ethylmaleimide-sensitive factor adaptor protein 30 Neighboring gene Purple acid phosphatases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. Feng C, et al. J Genet Genomics, 2021 May 20. PMID 34144927
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332094.1
    NM_001332095.1
    NM_101254.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of histone deacetylase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ELM2 domain-containing protein
    NP_172841.1
    • ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.2); Has 146 Blast hits to 146 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4748831..4751234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101254.4 → NP_172841.1  ELM2 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172841.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2P9, A0A654EEM8, Q9LMG9
      Conserved Domains (1) summary
      pfam01448
      Location:130 → 149
      ELM2; ELM2 domain

    2. NM_001332094.1 → NP_001322565.1  ELM2 domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2P9, A0A1P8AUG1

    3. NM_001332095.1 → NP_001322566.1  ELM2 domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2P9, A0A1P8AUH7, A0A7G2DTI3
      Conserved Domains (1) summary
      pfam01448
      Location:131 → 150
      ELM2; ELM2 domain
    Nucleotide Protein
    Heading Accession and Version

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