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    Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819603, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ankyrin repeat family protein
    Primary source
    TAIR:AT3G04470
    Locus tag
    AT3G04470
    See related
    Araport:AT3G04470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27C4.12; T27C4_12
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (1189595..1192659, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Homeodomain-like superfamily protein Neighboring gene peroxin-12 Neighboring gene endoribonuclease Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111318.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ankyrin repeat family protein
    NP_566227.3
    • Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G04780.1); Has 1133 Blast hits to 894 proteins in 124 species: Archae - 0; Bacteria - 10; Metazoa - 597; Fungi - 29; Plants - 361; Viruses - 4; Other Eukaryotes - 132 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1189595..1192659 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111318.5 → NP_566227.3  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566227.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBW0, A0A384KM82, Q9M840
      Conserved Domains (3) summary
      sd00045
      Location:69 → 98
      ANK; ANK repeat [structural motif]
      pfam11904
      Location:184 → 596
      GPCR_chapero_1; GPCR-chaperone
      cl39094
      Location:72 → 130
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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