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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819831, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT3G06530
    Locus tag
    AT3G06530
    See related
    Araport:AT3G06530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5E6.14; F5E6_14
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    40
    Sequence:
    Chromosome: 3; NC_003074.8 (2022433..2033912)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Plant neutral invertase family protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene agenet domain-containing protein Neighboring gene Rab escort protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang IF, et al. Proteomics, 2009 Jun. PMID 19452453, Free PMC Article
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111529.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_001189828.1
    • ARM repeat superfamily protein; CONTAINS InterPro DOMAIN/s: U3 small nucleolar RNA-associated protein 10 (InterPro:IPR022125), BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024).
    NP_001189829.1
    • ARM repeat superfamily protein; CONTAINS InterPro DOMAIN/s: U3 small nucleolar RNA-associated protein 10 (InterPro:IPR022125), BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024).
    NP_187305.5
    • ARM repeat superfamily protein; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar RNA-associated protein 10 (InterPro:IPR022125), BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024); Has 648 Blast hits to 415 proteins in 193 species: Archae - 0; Bacteria - 6; Metazoa - 222; Fungi - 268; Plants - 71; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2022433..2033912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202899.1 → NP_001189828.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189828.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7Y8, A0A654F4P0, F4JAY0
      Conserved Domains (2) summary
      smart01036
      Location:1891 → 2057
      BP28CT; BP28CT (NUC211) domain
      pfam12397
      Location:231 → 356
      U3snoRNP10; U3 small nucleolar RNA-associated protein 10

    2. NM_001202900.1 → NP_001189829.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189829.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7Y8, A0A654F4P0, F4JAY1
      Conserved Domains (2) summary
      smart01036
      Location:1880 → 2046
      BP28CT; BP28CT (NUC211) domain
      pfam12397
      Location:231 → 356
      U3snoRNP10; U3 small nucleolar RNA-associated protein 10

    3. NM_001337662.1 → NP_001326372.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7Y8, A0A1I9LP28, A0A654F4P0

    4. NM_001337663.1 → NP_001326373.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7Y8, A0A1I9LP29, A0A654F4P0

    5. NM_111529.6 → NP_187305.5  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187305.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JAY2, Q56X73, Q9C8Z4
      UniProtKB/TrEMBL
      A0A178V7Y8, A0A654F4P0
      Conserved Domains (2) summary
      smart01036
      Location:1889 → 2055
      BP28CT; BP28CT (NUC211) domain
      pfam12397
      Location:231 → 356
      U3snoRNP10; U3 small nucleolar RNA-associated protein 10
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8Z4.3

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