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    NIP1 NEP-interacting protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816284, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NIP1
    Official Full Name
    NEP-interacting protein 1
    Primary source
    TAIR:AT2G17750
    Locus tag
    AT2G17750
    See related
    Araport:AT2G17750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NEP-interacting protein 1; T17A5.3; T17A5_3
    Summary
    Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane.
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    Genomic context

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    See NIP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (7709192..7711151, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NEP-interacting protein 2 Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene basic region/leucine zipper motif 27

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein. Azevedo J, et al. Proc Natl Acad Sci U S A, 2008 Jul 1. PMID 18567673, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127329.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NEP-interacting protein 1
    NP_179366.1
    • NEP-interacting protein 1 (NIP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G19360.1); Has 746 Blast hits to 699 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 723; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7709192..7711151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127329.2 → NP_179366.1  NEP-interacting protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179366.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F4J5, Q1PF53
      Conserved Domains (2) summary
      pfam03080
      Location:170 → 389
      Neprosin
      pfam14365
      Location:44 → 155
      Neprosin_AP; Neprosin activation peptide
    Nucleotide Protein
    Heading Accession and Version

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