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    BPC7 basic pentacysteine 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818120, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BPC7
    Official Full Name
    basic pentacysteine 7
    Primary source
    TAIR:AT2G35550
    Locus tag
    AT2G35550
    See related
    Araport:AT2G35550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATBPC7; basic pentacysteine 7; BASIC PENTACYSTEINE 7; BBR; T32F12.7; T32F12_7
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    Genomic context

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    See BPC7 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (14929243..14930898)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Defender against death (DAD family) protein Neighboring gene basic region/leucine zipper transcription factor 16 Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene serpin Neighboring gene miscRNA Neighboring gene Serine protease inhibitor (SERPIN) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter. Meister RJ, et al. Plant J, 2004 Feb. PMID 14731261
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036411.2
    NM_001084540.2
    NM_129107.3
    NM_179918.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    basic pentacysteine 7
    NP_001031488.1
    • basic pentacysteine 7 (BPC7); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078009.1
    • basic pentacysteine 7 (BPC7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 220 Blast hits to 220 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_181098.2
    • basic pentacysteine 7 (BPC7); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 222 Blast hits to 222 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_850249.1
    • basic pentacysteine 7 (BPC7); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 220 Blast hits to 220 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14929243..14930898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036411.2 → NP_001031488.1  basic pentacysteine 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031488.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82286, Q8L875
      UniProtKB/TrEMBL
      A0A178VXU8, A0A5S9X4F8, A0A654EZ51
      Conserved Domains (1) summary
      pfam06217
      Location:16 → 226
      GAGA_bind; GAGA binding protein-like family

    2. NM_001084540.2 → NP_001078009.1  basic pentacysteine 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078009.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82286, Q8L875
      UniProtKB/TrEMBL
      A0A178VXU8, A0A5S9X4F8, A0A654EZ51
      Conserved Domains (1) summary
      pfam06217
      Location:16 → 226
      GAGA_bind; GAGA binding protein-like family

    3. NM_179918.2 → NP_850249.1  basic pentacysteine 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850249.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82286, Q8L875
      UniProtKB/TrEMBL
      A0A178VXU8, A0A5S9X4F8, A0A654EZ51
      Conserved Domains (1) summary
      pfam06217
      Location:16 → 226
      GAGA_bind; GAGA binding protein-like family

    4. NM_129107.3 → NP_181098.2  basic pentacysteine 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181098.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W000, A0A5S9X4F8, A0A654EZ51
      Conserved Domains (1) summary
      pfam06217
      Location:68 → 271
      GAGA_bind; GAGA binding protein-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82286.1

    Gene LinkOut

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