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    TRM11 tRNA modification 11 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822245, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM11
    Official Full Name
    tRNA modification 11 protein
    Primary source
    TAIR:AT3G26410
    Locus tag
    AT3G26410
    See related
    Araport:AT3G26410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTRM11; tRNA modification 11
    Summary
    Encodes a protein involved in modification of nucleosides in tRNA. Mutants have only 7.3% 2-methylguanosine levels of wild type counterparts.
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    Genomic context

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    See TRM11 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (9669415..9671348, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene eukaryotic translation initiation factor 4B1 Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein Neighboring gene transmembrane protein, putative (DUF707) Neighboring gene beta-1,4-N-acetylglucosaminyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana. Chen P, et al. BMC Plant Biol, 2010 Sep 14. PMID 20836892, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_113548.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables tRNA (guanine(10)-N2)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within 2-methylguanosine metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within tRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA modification 11 protein
    NP_566792.1
    • methyltransferases;nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), tRNA guanosine-2'-O-methyltransferase, TRM11 (InterPro:IPR016691), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 597 Blast hits to 588 proteins in 280 species: Archae - 150; Bacteria - 5; Metazoa - 158; Fungi - 132; Plants - 50; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9669415..9671348 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113548.5 → NP_566792.1  tRNA modification 11 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566792.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9T8, A0A5S9XFT6, Q9LIN4
      Conserved Domains (1) summary
      COG1041
      Location:1 → 414
      Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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