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    DNA-binding bromodomain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838357, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA-binding bromodomain-containing protein
    Primary source
    TAIR:AT1G17790
    Locus tag
    AT1G17790
    See related
    Araport:AT1G17790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2H15.2; F2H15_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (6125278..6127567, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PEP1 receptor 2 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein Neighboring gene uncharacterized protein Neighboring gene early nodulin-like protein 22 Neighboring gene beta-tonoplast intrinsic protein Neighboring gene ncRNA Neighboring gene testis-expressed sequence 2-like protein (DUF2404)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins. Garcia-Dominguez M, et al. J Biol Chem, 2008 Aug 1. PMID 18502747
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101642.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding bromodomain-containing protein
    NP_564037.1
    • DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: global transcription factor group E3 (TAIR:AT1G73150.1); Has 10948 Blast hits to 7134 proteins in 556 species: Archae - 16; Bacteria - 1050; Metazoa - 4460; Fungi - 1290; Plants - 1025; Viruses - 165; Other Eukaryotes - 2942 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6125278..6127567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101642.3 → NP_564037.1  DNA-binding bromodomain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564037.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1D7, Q93ZU2, Q9LMU8
      UniProtKB/TrEMBL
      A0A178WHU6, A0A5S9UXL8, A0A654EBT7
      Conserved Domains (2) summary
      pfam17035
      Location:330 → 390
      BET; Bromodomain extra-terminal - transcription regulation
      cl02556
      Location:133 → 230
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1D7.1

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