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    DDE family endonuclease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826688, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DDE family endonuclease
    Primary source
    TAIR:AT4G10890
    Locus tag
    AT4G10890
    See related
    Araport:AT4G10890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (6688833..6693903)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene uncharacterized protein Neighboring gene transcriptional coactivator p15 (PC4) family protein (KELP) Neighboring gene Nuclear transport factor 2 (NTF2) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001340690.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    DDE family endonuclease
    NP_001319897.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6688833..6693903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340691.1 → NP_001328077.1  DDE family endonuclease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JN57
      Conserved Domains (2) summary
      pfam10382
      Location:245 → 314
      DUF2439; Protein of unknown function (DUF2439)
      cl21562
      Location:72 → 161
      DDE_Tnp_4; DDE superfamily endonuclease

    2. NM_117158.4 → NP_567367.1  DDE family endonuclease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567367.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JN57
      Conserved Domains (2) summary
      pfam10382
      Location:245 → 314
      DUF2439; Protein of unknown function (DUF2439)
      cl21562
      Location:72 → 161
      DDE_Tnp_4; DDE superfamily endonuclease

    3. NM_001340690.1 → NP_001319897.1  DDE family endonuclease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JN57
      Conserved Domains (2) summary
      pfam10382
      Location:245 → 314
      DUF2439; Protein of unknown function (DUF2439)
      cl21562
      Location:72 → 161
      DDE_Tnp_4; DDE superfamily endonuclease
    Nucleotide Protein
    Heading Accession and Version

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