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    ORP2B OSBP(oxysterol binding protein)-related protein 2B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826858, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ORP2B
    Official Full Name
    OSBP(oxysterol binding protein)-related protein 2B
    Primary source
    TAIR:AT4G12460
    Locus tag
    AT4G12460
    See related
    Araport:AT4G12460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    OSBP(oxysterol binding protein)-related protein 2B; T1P17.50; T1P17_50
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    Genomic context

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    See ORP2B in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (7391208..7396511)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene zinc finger (C2H2 type) family protein Neighboring gene azelaic acid induced 1 Neighboring gene uncharacterized protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084907.1
    NM_001340778.1
    NM_001340779.1
    NM_001340780.1
    NM_001340781.1
    NM_117316.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    OSBP(oxysterol binding protein)-related protein 2B
    NP_001078376.1
    • OSBP(oxysterol binding protein)-related protein 2B (ORP2B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 2A (TAIR:AT4G22540.1); Has 2282 Blast hits to 2224 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 1139; Fungi - 602; Plants - 276; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).
    NP_192983.2
    • OSBP(oxysterol binding protein)-related protein 2B (ORP2B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 2A (TAIR:AT4G22540.1); Has 2708 Blast hits to 2476 proteins in 219 species: Archae - 0; Bacteria - 2; Metazoa - 1436; Fungi - 690; Plants - 296; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7391208..7396511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340775.1 → NP_001327964.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B361

    2. NM_001340776.1 → NP_001327965.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B361

    3. NM_001340777.1 → NP_001327966.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3P5, A0A1P8B380, A0A5S9XRL9

    4. NM_117316.3 → NP_192983.2  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192983.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L711, Q9SU36
      UniProtKB/TrEMBL
      A0A178V3P5
      Conserved Domains (3) summary
      pfam00169
      Location:30 → 149
      PH; PH domain
      pfam01237
      Location:323 → 662
      Oxysterol_BP; Oxysterol-binding protein
      cl17171
      Location:28 → 162
      PH-like; Pleckstrin homology-like domain

    5. NM_001340778.1 → NP_001327967.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B371, A0A7G2F2B3

    6. NM_001340779.1 → NP_001327968.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B378, A0A7G2F2B3

    7. NM_001340780.1 → NP_001327962.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L711, Q9SU36
      UniProtKB/TrEMBL
      A0A178V3P5
      Conserved Domains (3) summary
      pfam00169
      Location:30 → 149
      PH; PH domain
      pfam01237
      Location:323 → 662
      Oxysterol_BP; Oxysterol-binding protein
      cl17171
      Location:28 → 162
      PH-like; Pleckstrin homology-like domain

    8. NM_001084907.1 → NP_001078376.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078376.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SU36
      Conserved Domains (1) summary
      pfam01237
      Location:1 → 334
      Oxysterol_BP; Oxysterol-binding protein

    9. NM_001340781.1 → NP_001327963.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B361
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SU36.2

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