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    RK3 receptor kinase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827890, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RK3
    Official Full Name
    receptor kinase 3
    Primary source
    TAIR:AT4G21380
    Locus tag
    AT4G21380
    See related
    Araport:AT4G21380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARK3; receptor kinase 3; T6K22.110; T6K22_110
    Summary
    encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.
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    Genomic context

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    See RK3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (11388827..11393226, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene Protein kinase superfamily protein Neighboring gene S-locus lectin protein kinase family protein Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 28 Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 29

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparison of the expression patterns of two small gene families of S gene family receptor kinase genes during the defence response in Brassica oleracea and Arabidopsis thaliana. Pastuglia M, et al. Gene, 2002 Jan 9. PMID 11814694
    2. Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis. Samuel MA, et al. Plant Physiol, 2008 Aug. PMID 18552232, Free PMC Article
    3. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
    4. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    5. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341478.1
    NM_118258.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transmembrane receptor protein serine/threonine kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    receptor kinase 3
    NP_193869.1
    • receptor kinase 3 (RK3); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), S-locus, receptor kinase (InterPro:IPR022126); BEST Arabidopsis thaliana protein match is: receptor kinase 2 (TAIR:AT1G65800.1); Has 120297 Blast hits to 118488 proteins in 4631 species: Archae - 97; Bacteria - 13304; Metazoa - 44101; Fungi - 10092; Plants - 34714; Viruses - 410; Other Eukaryotes - 17579 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11388827..11393226 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118258.3 → NP_193869.1  receptor kinase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193869.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A3RCC7, A7Y5X0, D6NTP9, D6NTQ1, D6NTQ4, D6NTQ5, D6NTQ8, D6NTR0, D6NTR1, D6NTR5, D6NTR7, D6NTR8, D6NTS3, D6NTS6, D6NTS8, D6NTT4, D6NTV2, D6NTX2, O81905, Q9S971
      UniProtKB/TrEMBL
      A0A178V2J5
      Conserved Domains (8) summary
      smart00108
      Location:37 → 158
      B_lectin; Bulb-type mannose-specific lectin
      smart00221
      Location:531 → 794
      STYKc; Protein kinase; unclassified specificity
      cd00028
      Location:37 → 159
      B_lectin; Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically ...
      pfam11883
      Location:802 → 850
      DUF3403; Domain of unknown function (DUF3403)
      cd14066
      Location:532 → 800
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:217 → 326
      S_locus_glycop; S-locus glycoprotein domain
      pfam08276
      Location:348 → 413
      PAN_2; PAN-like domain
      pfam12398
      Location:474 → 516
      DUF3660; Receptor serine/threonine kinase

    2. NM_001341478.1 → NP_001328871.1  receptor kinase 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B600
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81905.1

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