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    PIF1 helicase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824333, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PIF1 helicase
    Primary source
    TAIR:AT3G51700
    Locus tag
    AT3G51700
    See related
    Araport:AT3G51700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (19179266..19181189, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene PIF1 helicase Neighboring gene ncRNA Neighboring gene D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115029.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PIF1 helicase
    NP_190738.1
    • PIF1 helicase; CONTAINS InterPro DOMAIN/s: DNA helicase PIF1, ATP-dependent (InterPro:IPR010285); BEST Arabidopsis thaliana protein match is: PIF1 helicase (TAIR:AT3G51690.1); Has 1335 Blast hits to 1330 proteins in 296 species: Archae - 2; Bacteria - 310; Metazoa - 217; Fungi - 167; Plants - 426; Viruses - 5; Other Eukaryotes - 208 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19179266..19181189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115029.1 → NP_190738.1  PIF1 helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190738.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XKP1, Q9SCT8
      Conserved Domains (2) summary
      cl09930
      Location:20 → 56
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
      cl21455
      Location:42 → 216
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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