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    Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824949, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pectin lyase-like superfamily protein
    Primary source
    TAIR:AT3G57790
    Locus tag
    AT3G57790
    See related
    Araport:AT3G57790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (21405283..21407624, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) protein Neighboring gene uncharacterized protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene ncRNA Neighboring gene Cysteine proteinases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339891.1
    NM_115640.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polygalacturonase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Pectin lyase-like superfamily protein
    NP_567055.1
    • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G42950.1); Has 3246 Blast hits to 3240 proteins in 468 species: Archae - 6; Bacteria - 1493; Metazoa - 3; Fungi - 347; Plants - 1297; Viruses - 2; Other Eukaryotes - 98 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21405283..21407624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115640.3 → NP_567055.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567055.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9R2, A0A384LL73, A0A5S9XMI9, A0A654FIR5, A0A7G2EUX6, F4J3I0
      Conserved Domains (1) summary
      COG5434
      Location:35 → 319
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

    2. NM_001339891.1 → NP_001327729.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9R2, A0A384LL73, A0A5S9XMI9, A0A654FIR5, A0A7G2EUX6, F4J3I0
      Conserved Domains (1) summary
      COG5434
      Location:35 → 319
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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