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    Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824957, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
    Primary source
    TAIR:AT3G57880
    Locus tag
    AT3G57880
    See related
    Araport:AT3G57880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (21430922..21434648, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene UV-B-insensitive 4-like protein Neighboring gene sumo conjugation enzyme 1 Neighboring gene Tubulin binding cofactor C domain-containing protein Neighboring gene import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple C2 domains and transmembrane region proteins (MCTPs) tether membranes at plasmodesmata. Brault ML, et al. EMBO Rep, 2019 Aug. PMID 31286648, Free PMC Article
    2. FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis. Liu L, et al. Cell Rep, 2018 May 8. PMID 29742441
    3. Characterization of Multiple C2 Domain and Transmembrane Region Proteins in Arabidopsis. Liu L, et al. Plant Physiol, 2018 Mar. PMID 29259105, Free PMC Article
    4. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    5. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001339897.1
    NM_115650.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within shoot apical meristem development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 
    colocalizes_with plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
    NP_191347.1
    • Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT1G51570.1); Has 5845 Blast hits to 4237 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 3557; Fungi - 274; Plants - 1573; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21430922..21434648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339896.1 → NP_001327705.1  Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VJU5, Q0TV71, Q94JQ8, Q9M2R0
      UniProtKB/TrEMBL
      A0A384L1I1, A0A5S9XLS5, A0A654EIZ4
      Conserved Domains (4) summary
      cd04019
      Location:202 → 351
      C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08378
      Location:40 → 164
      C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08379
      Location:363 → 490
      C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      pfam08372
      Location:618 → 773
      PRT_C; Plant phosphoribosyltransferase C-terminal

    2. NM_001339898.1 → NP_001327704.1  Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VJU5, Q0TV71, Q94JQ8, Q9M2R0
      UniProtKB/TrEMBL
      A0A384L1I1, A0A5S9XLS5, A0A654EIZ4
      Conserved Domains (4) summary
      cd04019
      Location:202 → 351
      C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08378
      Location:40 → 164
      C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08379
      Location:363 → 490
      C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      pfam08372
      Location:618 → 773
      PRT_C; Plant phosphoribosyltransferase C-terminal

    3. NM_115650.5 → NP_191347.1  Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191347.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VJU5, Q0TV71, Q94JQ8, Q9M2R0
      UniProtKB/TrEMBL
      A0A384L1I1, A0A5S9XLS5, A0A654EIZ4
      Conserved Domains (4) summary
      cd04019
      Location:202 → 351
      C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08378
      Location:40 → 164
      C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08379
      Location:363 → 490
      C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      pfam08372
      Location:618 → 773
      PRT_C; Plant phosphoribosyltransferase C-terminal

    4. NM_001339897.1 → NP_001327706.1  Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VJU5, Q0TV71, Q94JQ8, Q9M2R0
      UniProtKB/TrEMBL
      A0A384L1I1, A0A5S9XLS5, A0A654EIZ4
      Conserved Domains (4) summary
      cd04019
      Location:202 → 351
      C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08378
      Location:40 → 164
      C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08379
      Location:363 → 490
      C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      pfam08372
      Location:618 → 773
      PRT_C; Plant phosphoribosyltransferase C-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M2R0.1

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