U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DIN2 Glycosyl hydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825184, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    DIN2
    Official Full Name
    Glycosyl hydrolase superfamily protein
    Primary source
    TAIR:AT3G60140
    Locus tag
    AT3G60140
    See related
    Araport:AT3G60140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BETA GLUCOSIDASE 30; BGLU30; DARK INDUCIBLE 2; SENESCENCE-RELATED GENE 2; SRG2
    Summary
    Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See DIN2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (22216540..22220824)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene beta glucosidase 27 Neighboring gene beta glucosidase 16 Neighboring gene miscRNA Neighboring gene NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598) Neighboring gene multidrug resistance-associated protein 9

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Involvement of BGLU30 in Glucosinolate Catabolism in the Arabidopsis Leaf under Dark Conditions. Morikawa-Ichinose T, et al. Plant Cell Physiol, 2020 Jun 1. PMID 32255184
    2. Sulfur Deficiency-Induced Glucosinolate Catabolism Attributed to Two β-Glucosidases, BGLU28 and BGLU30, is Required for Plant Growth Maintenance under Sulfur Deficiency. Zhang L, et al. Plant Cell Physiol, 2020 Apr 1. PMID 32049325
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Involvement of BGLU30 in Glucosinolate Catabolism in the Arabidopsis Leaf under Dark Conditions.
      Title: Involvement of BGLU30 in Glucosinolate Catabolism in the Arabidopsis Leaf under Dark Conditions.
    2. Sulfur Deficiency-Induced Glucosinolate Catabolism Attributed to Two beta-Glucosidases, BGLU28 and BGLU30, is Required for Plant Growth Maintenance under Sulfur Deficiency.
      Title: Sulfur Deficiency-Induced Glucosinolate Catabolism Attributed to Two β-Glucosidases, BGLU28 and BGLU30, is Required for Plant Growth Maintenance under Sulfur Deficiency.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_115877.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Glycosyl hydrolase superfamily protein
    NP_191573.1
    • DARK INDUCIBLE 2 (DIN2); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: aging, response to light stimulus, response to sucrose stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 28 (TAIR:AT2G44460.1); Has 11303 Blast hits to 10947 proteins in 1460 species: Archae - 142; Bacteria - 7771; Metazoa - 714; Fungi - 199; Plants - 1462; Viruses - 0; Other Eukaryotes - 1015 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22216540..22220824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340024.1 → NP_001327679.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LT24

    2. NM_115877.4 → NP_191573.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191573.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39225, Q39226, Q8L7I3, Q9ASR7, Q9FVM4, Q9M1C9
      UniProtKB/TrEMBL
      A0A5S9XN58, A0A654FJF6
      Conserved Domains (1) summary
      cl23725
      Location:30 → 504
      Glyco_hydro; Glycosyl hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1C9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.