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    RRP41 3'-5'-exoribonuclease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825335, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RRP41
    Official Full Name
    3'-5'-exoribonuclease family protein
    Primary source
    TAIR:AT3G61620
    Locus tag
    AT3G61620
    See related
    Araport:AT3G61620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EXONUCLEASE RRP41
    Summary
    exonuclease RRP41 (RRP41)
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    Genomic context

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    See RRP41 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (22801215..22804104, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene POZ/BTB containin G-protein 1 Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene cytokinin response factor 6 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities. Sikorska N, et al. Nat Commun, 2017 Dec 18. PMID 29255150, Free PMC Article
    2. Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3'-->5' exonuclease containing S1 and KH RNA-binding domains. Chekanova JA, et al. Nucleic Acids Res, 2002 Feb 1. PMID 11809881, Free PMC Article
    3. The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. Lange H, et al. PLoS Genet, 2014 Aug. PMID 25144737, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125406.1
    NM_116027.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    3'-5'-exoribonuclease family protein
    NP_001118878.1
    • RRP41; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: 3'-5'-exoribonuclease family protein (TAIR:AT4G27490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_191721.1
    • RRP41; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: 3'-5'-exoribonuclease family protein (TAIR:AT4G27490.1); Has 12943 Blast hits to 12918 proteins in 2731 species: Archae - 406; Bacteria - 8580; Metazoa - 462; Fungi - 283; Plants - 250; Viruses - 0; Other Eukaryotes - 2962 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22801215..22804104 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116027.5 → NP_191721.1  3'-5'-exoribonuclease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191721.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SP08
      UniProtKB/TrEMBL
      A0A178VJU4, A0A5S9XMT6
      Conserved Domains (1) summary
      cd11370
      Location:8 → 233
      RNase_PH_RRP41; RRP41 subunit of eukaryotic exosome

    2. NM_001125406.1 → NP_001118878.1  3'-5'-exoribonuclease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118878.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SP08
      UniProtKB/TrEMBL
      A0A178VJU4, A0A5S9XMT6
      Conserved Domains (1) summary
      cd11370
      Location:8 → 233
      RNase_PH_RRP41; RRP41 subunit of eukaryotic exosome
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SP08.1

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