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    Pathogenesis-related thaumatin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831881, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pathogenesis-related thaumatin superfamily protein
    Primary source
    TAIR:AT5G02140
    Locus tag
    AT5G02140
    See related
    Araport:AT5G02140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7H20.190; T7H20_190
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (423202..424437)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CYCLIN D7;1 Neighboring gene one helix protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Fes1C Neighboring gene uncharacterized protein Neighboring gene Transmembrane amino acid transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of sticky generative cell mutants reveals that suppression of callose deposition in the generative cell is necessary for generative cell internalization and differentiation in Arabidopsis. Oh SA, et al. Plant J, 2021 Apr. PMID 33458909
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_120292.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pathogenesis-related thaumatin superfamily protein
    NP_195834.1
    • Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G18250.2); Has 1588 Blast hits to 1558 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 96; Plants - 1388; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      423202..424437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342647.1 → NP_001331114.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URU8, A0A1P8BCW7, A0A384LL40, A0A654FXI2
      Conserved Domains (1) summary
      pfam00314
      Location:27 → 241
      Thaumatin; Thaumatin family

    2. NM_120292.2 → NP_195834.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195834.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXI2, Q9LZL8
      Conserved Domains (1) summary
      pfam00314
      Location:27 → 241
      Thaumatin; Thaumatin family
    Nucleotide Protein
    Heading Accession and Version

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