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    RAP release 2, galactose-binding-like domain protein, putative (DUF1997) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830323, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RAP release 2, galactose-binding-like domain protein, putative (DUF1997)
    Primary source
    TAIR:AT5G04440
    Locus tag
    AT5G04440
    See related
    Araport:AT5G04440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T19N18.1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (1254757..1257040)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 2 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene binding to TOMV RNA 1L (long form) Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene cyclin-dependent protein kinase inhibitor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_120526.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RAP release 2, galactose-binding-like domain protein, putative (DUF1997)
    NP_196064.2
    • Protein of unknown function (DUF1997); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT4G31115.1); Has 266 Blast hits to 266 proteins in 73 species: Archae - 0; Bacteria - 111; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1254757..1257040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342773.1 → NP_001332161.1  RAP release 2, galactose-binding-like domain protein, putative (DUF1997) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BG49, Q9LZ81

    2. NM_120526.5 → NP_196064.2  RAP release 2, galactose-binding-like domain protein, putative (DUF1997) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196064.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULP9, Q500X2, Q9LZ81
      Conserved Domains (1) summary
      pfam09366
      Location:85 → 241
      DUF1997; Protein of unknown function (DUF1997)
    Nucleotide Protein
    Heading Accession and Version

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