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    NDL2 N-MYC downregulated-like 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831051, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NDL2
    Official Full Name
    N-MYC downregulated-like 2
    Primary source
    TAIR:AT5G11790
    Locus tag
    AT5G11790
    See related
    Araport:AT5G11790
    Gene type
    protein coding
    RNA name
    miRNA
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    N-MYC downregulated-like 2; T22P22.180; T22P22_180
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    Genomic context

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    See NDL2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (3799408..3803216)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NADH-ubiquinone oxidoreductase 20 kDa subunit Neighboring gene SNF2 domain protein Neighboring gene microRNA ath-MIR5629 precursor Neighboring gene K+ efflux antiporter 6 Neighboring gene rhomboid family protein Neighboring gene Plant self-incompatibility protein S1 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis NDL-AGB1 modules Play Role in Abiotic Stress and Hormonal Responses Along with Their Specific Functions. Katiyar A, et al. Int J Mol Sci, 2019 Sep 24. PMID 31554237, Free PMC Article
    2. Arabidopsis N-MYC DOWNREGULATED-LIKE1, a positive regulator of auxin transport in a G protein-mediated pathway. Mudgil Y, et al. Plant Cell, 2009 Nov. PMID 19948787, Free PMC Article
    3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    • mature miRNA accession:MIMAT0022388
    NM_121217.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of auxin polar transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    N-MYC downregulated-like 2
    NP_568251.1
    • N-MYC downregulated-like 2 (NDL2); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 1 (TAIR:AT5G56750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3799408..3803216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343214.1 → NP_001332289.1  N-MYC downregulated-like 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGH7, A0A7G2FA10
      Conserved Domains (1) summary
      cl21494
      Location:1 → 251
      Abhydrolase; alpha/beta hydrolases

    2. NM_121217.3 → NP_568251.1  N-MYC downregulated-like 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568251.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z3F8, Q9ASU8, Q9LYF2
      UniProtKB/TrEMBL
      A0A178UTF2, A0A5S9Y414, A0A7G2FA10
      Conserved Domains (1) summary
      cl21494
      Location:21 → 305
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ASU8.1

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