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    FRS12 FAR1-related sequence 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832014, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FRS12
    Official Full Name
    FAR1-related sequence 12
    Primary source
    TAIR:AT5G18960
    Locus tag
    AT5G18960
    See related
    Araport:AT5G18960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17K4.210; F17K4_210; FAR1-related sequence 12
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    Genomic context

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    See FRS12 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (6330297..6333650)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Mo25 family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene AWPM-19-like family protein Neighboring gene ARM repeat superfamily protein Neighboring gene Pectin lyase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes. Fernández-Calvo P, et al. New Phytol, 2020 Aug. PMID 32266972
    2. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Ritter A, et al. Nat Commun, 2017 May 11. PMID 28492275, Free PMC Article
    3. Chromatin attachment to the nuclear matrix represses hypocotyl elongation in Arabidopsis thaliana. Xu L, et al. Nat Commun, 2024 Feb 12. PMID 38346986, Free PMC Article
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes.
      Title: FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes.
    2. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
      Title: The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121901.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FAR1-related sequence 12
    NP_197397.1
    • FAR1-related sequence 12 (FRS12); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 7 (TAIR:AT3G06250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6330297..6333650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343577.1 → NP_001330829.1  FAR1-related sequence 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E7I5
      UniProtKB/TrEMBL
      A0A178UJZ0, A0A7G2F9P5
      Conserved Domains (2) summary
      PLN03097
      Location:207 → 779
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      cl40636
      Location:57 → 131
      FAR1; FAR1 DNA-binding domain

    2. NM_121901.2 → NP_197397.1  FAR1-related sequence 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197397.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E7I5
      UniProtKB/TrEMBL
      A0A178UJZ0, A0A7G2F9P5
      Conserved Domains (2) summary
      PLN03097
      Location:207 → 779
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      cl40636
      Location:57 → 131
      FAR1; FAR1 DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E7I5.1

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