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    Zn-dependent exopeptidases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834237, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zn-dependent exopeptidases superfamily protein
    Primary source
    TAIR:AT5G42320
    Locus tag
    AT5G42320
    See related
    Araport:AT5G42320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K5J14.5; K5J14_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (16918489..16921596, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FtsH extracellular protease family Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene transcription activator-like protein Neighboring gene ubiquitin-like protein 5 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene Transcription factor IIS protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001344442.1
    NM_123597.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metallocarboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane HDA PubMed 

    General protein information

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    Preferred Names
    Zn-dependent exopeptidases superfamily protein
    NP_199047.2
    • Zn-dependent exopeptidases superfamily protein; FUNCTIONS IN: metallocarboxypeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M14, carboxypeptidase A (InterPro:IPR000834); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16918489..16921596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123597.3 → NP_199047.2  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199047.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G7B9, F4K1I4
      Conserved Domains (1) summary
      cd06227
      Location:1 → 270
      M14-like_2; Peptidase M14-like domain; uncharacterized subfamily

    2. NM_001344442.1 → NP_001332683.1  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T3D6, A0A654G7B9, A0A7G2FG35
      Conserved Domains (1) summary
      cd06227
      Location:100 → 321
      M14-CPA-like; Peptidase M14 carboxypeptidase A-like domain; uncharacterized subfamily
    Nucleotide Protein
    Heading Accession and Version

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