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    prolamin-like protein (DUF1278) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834874, updated on 18-Sep-2024

    Summary

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    Official Full Name
    prolamin-like protein (DUF1278)
    Primary source
    TAIR:AT5G48210
    Locus tag
    AT5G48210
    See related
    Araport:AT5G48210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MIF21.10; MIF21_10
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (19548414..19549141)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycosyltransferase family protein (DUF23) Neighboring gene uncharacterized protein Neighboring gene zinc ion binding protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene acetoacetyl-CoA thiolase 2 Neighboring gene Rrp15p protein Neighboring gene B-box type zinc finger protein with CCT domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_124196.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    prolamin-like protein (DUF1278)
    NP_568693.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: ECA1 gametogenesis related family protein (TAIR:AT3G42565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19548414..19549141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124196.2 → NP_568693.1  prolamin-like protein (DUF1278) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568693.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGH9, Q9LUB3
      Conserved Domains (1) summary
      cl05275
      Location:7 → 97
      Prolamin_like; Prolamin-like
    Nucleotide Protein
    Heading Accession and Version

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