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    Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835150, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
    Primary source
    TAIR:AT5G50780
    Locus tag
    AT5G50780
    See related
    Araport:AT5G50780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFB16.18; MFB16_18
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    20
    Sequence:
    Chromosome: 5; NC_003076.8 (20650086..20655401)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene hydroxysteroid dehydrogenase 6 Neighboring gene Nodulin MtN3 family protein Neighboring gene Nodulin MtN3 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes. Harris CJ, et al. PLoS Genet, 2016 May. PMID 27171361, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124456.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables endonuclease activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of defense response to oomycetes IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA repair ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of gene silencing by regulatory ncRNA ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    colocalizes_with chromocenter IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
    NP_199891.4
    • Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (TAIR:AT4G24970.1); Has 1155 Blast hits to 1113 proteins in 171 species: Archae - 12; Bacteria - 57; Metazoa - 490; Fungi - 74; Plants - 241; Viruses - 3; Other Eukaryotes - 278 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20650086..20655401
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344908.1 → NP_001331717.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEQ3, A0A5S9YF54, A0A654GA33
      Conserved Domains (3) summary
      pfam01576
      Location:705 → 802
      Myosin_tail_1; Myosin tail
      pfam17942
      Location:402 → 546
      Morc6_S5; Morc6 ribosomal protein S5 domain 2-like
      cl00075
      Location:159 → 283
      HATPase; Histidine kinase-like ATPase domain

    2. NM_001344909.1 → NP_001331718.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEQ8

    3. NM_124456.4 → NP_199891.4  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199891.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YF54, A0A654GA33
      Conserved Domains (4) summary
      pfam04156
      Location:696 → 817
      IncA; IncA protein
      pfam14197
      Location:723 → 772
      Cep57_CLD_2; Centrosome localization domain of PPC89
      pfam16046
      Location:657 → 780
      FAM76; FAM76 protein
      cl00075
      Location:172 → 294
      HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
    Nucleotide Protein
    Heading Accession and Version

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