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    Protein prenylyltransferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832898, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Protein prenylyltransferase superfamily protein
    Primary source
    TAIR:AT5G28220
    Locus tag
    AT5G28220
    See related
    Araport:AT5G28220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26C17.8; F26C17_8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (10190357..10193123, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene mRNA capping enzyme family protein Neighboring gene pseudo Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_122705.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protein prenylyltransferase superfamily protein
    NP_198174.2
    • Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT3G04830.1); Has 532 Blast hits to 529 proteins in 210 species: Archae - 27; Bacteria - 37; Metazoa - 228; Fungi - 111; Plants - 54; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      10190357..10193123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122705.4 → NP_198174.2  Protein prenylyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198174.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K725, Q9S9L2
      Conserved Domains (2) summary
      TIGR03939
      Location:51 → 185
      PGA_TPR_OMP; poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
      sd00006
      Location:115 → 139
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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