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    Nucleotidylyl transferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839731, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Nucleotidylyl transferase superfamily protein
    Primary source
    TAIR:AT1G28350
    Locus tag
    AT1G28350
    See related
    Araport:AT1G28350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3M18.22; F3M18_22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    23
    Sequence:
    Chromosome: 1; NC_003070.9 (9943737..9949835)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene receptor like protein 4 Neighboring gene ERF domain protein 12 Neighboring gene ERF domain protein 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332810.1
    NM_001332811.1
    NM_102601.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables tyrosine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA aminoacylation for protein translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nucleotidylyl transferase superfamily protein
    NP_001319097.1
    • Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tyrosyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (TAIR:AT2G33840.1); Has 6761 Blast hits to 4745 proteins in 1539 species: Archae - 718; Bacteria - 3084; Metazoa - 577; Fungi - 521; Plants - 241; Viruses - 10; Other Eukaryotes - 1610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9943737..9949835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332810.1 → NP_001319097.1  Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HWL4, Q9SGN2
      UniProtKB/TrEMBL
      A0A178W822, A0A5S9W9C8, A0A654EF35

    2. NM_102601.6 → NP_174157.4  Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174157.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HWL4, Q9SGN2
      UniProtKB/TrEMBL
      A0A178W822, A0A5S9W9C8, A0A654EF35
      Conserved Domains (2) summary
      PTZ00348
      Location:25 → 717
      PTZ00348; tyrosyl-tRNA synthetase; Provisional
      cl00015
      Location:377 → 748
      nt_trans; nucleotidyl transferase superfamily

    3. NM_001332811.1 → NP_001320714.1  Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W822, A0A1P8ANP3, A0A5S9W9C8, A0A654EF35
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HWL4.1

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