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    algF alginate o-acetyltransferase AlgF [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 878717, updated on 24-Aug-2024

    Summary

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    Gene symbol
    algF
    Gene description
    alginate o-acetyltransferase AlgF
    Locus tag
    PA3550
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (3977184..3977834)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene alginate o-acetylase AlgI Neighboring gene alginate o-acetylase AlgJ Neighboring gene bifunctional mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Neighboring gene UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase Neighboring gene undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pseudomonas aeruginosa AlgF is a protein-protein interaction mediator required for acetylation of the alginate exopolysaccharide. Low KE, et al. J Biol Chem, 2023 Nov. PMID 37797696, Free PMC Article
    2. Nucleotide sequence and expression of the Pseudomonas aeruginosa algF gene controlling acetylation of alginate. Shinabarger D, et al. Mol Microbiol, 1993 Sep. PMID 7934909
    3. Mutant analysis and cellular localization of the AlgI, AlgJ, and AlgF proteins required for O acetylation of alginate in Pseudomonas aeruginosa. Franklin MJ, et al. J Bacteriol, 2002 Jun. PMID 12003941, Free PMC Article
    4. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    5. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Pseudomonas aeruginosa AlgF is a protein-protein interaction mediator required for acetylation of the alginate exopolysaccharide.
      Title: Pseudomonas aeruginosa AlgF is a protein-protein interaction mediator required for acetylation of the alginate exopolysaccharide.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within alginic acid acetylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within alginic acid acetylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to stimulus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alginate o-acetyltransferase AlgF
    NP_252240.1
    • Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      3977184..3977834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_252240.1 alginate o-acetyltransferase AlgF [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_252240.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2R3ISZ6
      Conserved Domains (1) summary
      pfam11182
      Location:30 → 194
      AlgF; Alginate O-acetyl transferase AlgF
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q06062.2

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