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    CG18004 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36154, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG18004provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0033566
    Locus tag
    Dmel_CG18004
    See related
    AllianceGenome:FB:FBgn0033566
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG18004
    Summary
    Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in organism. Orthologous to human INO80E (INO80 complex subunit E). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG18004 in Genome Data Viewer
    Location:
    47C5-47C5; 2-63 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (10885019..10886375)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (6772524..6773880)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Peroxin 6 Neighboring gene Hydroxyacid oxidase Neighboring gene mir-1008 stem loop Neighboring gene uncharacterized protein Neighboring gene cag Neighboring gene uncharacterized protein Neighboring gene NADH dehydrogenase (ubiquinone) B14 subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Okamura K, et al. Cell, 2007 Jul 13. PMID 17599402, Free PMC Article
    2. Analysis of insect nuclear small heat shock proteins and interacting proteins. Moutaoufik MT, et al. Cell Stress Chaperones, 2021 Jan. PMID 32888179, Free PMC Article
    3. Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans. Chung WJ, et al. Genome Res, 2011 Feb. PMID 21177960, Free PMC Article
    4. Regulation of the BMP Signaling-Responsive Transcriptional Network in the Drosophila Embryo. Deignan L, et al. PLoS Genet, 2016 Jul. PMID 27379389, Free PMC Article
    5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Ino80 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG18004-PA
    CG18004-PB
    CG18004-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      10885019..10886375
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_165808.2 → NP_724986.2  uncharacterized protein Dmel_CG18004, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_724986.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8D4, C6SV52
      Related
      FBpp0088670, FBtr0089729

    2. NM_136781.2 → NP_610625.1  uncharacterized protein Dmel_CG18004, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610625.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8D5, C6SV52

    3. NM_165807.3 → NP_724985.2  uncharacterized protein Dmel_CG18004, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_724985.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8D6, C6SV52
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z8D4 A1Z8D4
    A1Z8D5 A1Z8D5
    A1Z8D6 A1Z8D6
    Q8MKK6 Q8MKK6

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