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    NimB4 Nimrod B4 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34814, updated on 9-Dec-2024

    Summary

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    Official Symbol
    NimB4provided by FlyBase
    Official Full Name
    Nimrod B4provided by FlyBase
    Primary source
    FLYBASE:FBgn0028542
    Locus tag
    Dmel_CG33115
    See related
    AllianceGenome:FB:FBgn0028542
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BG:DS00180.8; CG16882; CG33115; CT37470; Dmel\CG33115; DS00180.8; nimB4
    Summary
    Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See NimB4 in Genome Data Viewer
    Location:
    34E5-34E5; 2-50 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (13968280..13969976, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (13968280..13969976, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Nimrod B1 Neighboring gene Nimrod B2 Neighboring gene Nimrod B3 Neighboring gene Nimrod B5 Neighboring gene Hemese Neighboring gene Nimrod C1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Natural variation of gene models in Drosophila melanogaster. Kurmangaliyev YZ, et al. BMC Genomics, 2015 Mar 17. PMID 25888292, Free PMC Article
    2. GeneID in Drosophila. Parra G, et al. Genome Res, 2000 Apr. PMID 10779490, Free PMC Article
    3. Evolution of genes and repeats in the Nimrod superfamily. Somogyi K, et al. Mol Biol Evol, 2008 Nov. PMID 18703524
    4. A secreted factor NimrodB4 promotes the elimination of apoptotic corpses by phagocytes in Drosophila. Petrignani B, et al. EMBO Rep, 2021 Sep 6. PMID 34370384, Free PMC Article
    5. Nimrod, a putative phagocytosis receptor with EGF repeats in Drosophila plasmatocytes. Kurucz E, et al. Curr Biol, 2007 Apr 3. PMID 17363253

    See all (46) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in phagocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    nimrod B4
    Names
    CG33115-PA
    NimB4-PA
    nimrodB4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      13968280..13969976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_176032.3 → NP_788046.1  nimrod B4 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788046.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9NKE0, Q9VJU7, Q9VJU8
      Related
      FBpp0080190
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VJU8 Q9VJU8

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