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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCr8
Genomic
-
NC_086020.1 Reference GRCr8
- Range
-
185069492..185129741
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_063281872.1 → XP_063137942.1 pogo transposable element with ZNF domain isoform X2
- UniProtKB/TrEMBL
- A6K2T0, A6K2T1, D3ZV33
-
XM_017590895.3 → XP_017446384.1 pogo transposable element with ZNF domain isoform X1
- UniProtKB/TrEMBL
- A0A0G2JY58, A6K2T0
- Conserved Domains (6) summary
-
- PRK00404
Location:872 → 929
- tatB; Sec-independent protein translocase subunit TatB
- smart00674
Location:1018 → 1079
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- PHA03247
Location:264 → 458
- PHA03247; large tegument protein UL36; Provisional
- sd00017
Location:529 → 550
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:493 → 526
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cl21549
Location:1159 → 1270
- rve; Integrase core domain
-
XM_063281871.1 → XP_063137941.1 pogo transposable element with ZNF domain isoform X2
- UniProtKB/TrEMBL
- A6K2T0, A6K2T1, D3ZV33
-
XM_008761295.4 → XP_008759517.1 pogo transposable element with ZNF domain isoform X1
- UniProtKB/TrEMBL
- A0A0G2JY58, A6K2T0
- Related
- ENSRNOP00000070527.2, ENSRNOT00000082849.3
- Conserved Domains (6) summary
-
- PRK00404
Location:872 → 929
- tatB; Sec-independent protein translocase subunit TatB
- smart00674
Location:1018 → 1079
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- PHA03247
Location:264 → 458
- PHA03247; large tegument protein UL36; Provisional
- sd00017
Location:529 → 550
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:493 → 526
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cl21549
Location:1159 → 1270
- rve; Integrase core domain
-
XM_008761297.4 → XP_008759519.1 pogo transposable element with ZNF domain isoform X2
See identical proteins and their annotated locations for XP_008759519.1
- UniProtKB/TrEMBL
- A6K2T0, A6K2T1, D3ZV33
- Related
- ENSRNOP00000070100.1, ENSRNOT00000084023.3
- Conserved Domains (6) summary
-
- PRK00404
Location:819 → 876
- tatB; Sec-independent protein translocase subunit TatB
- smart00674
Location:965 → 1026
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- PHA03247
Location:211 → 405
- PHA03247; large tegument protein UL36; Provisional
- sd00017
Location:476 → 497
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:440 → 473
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cl21549
Location:1106 → 1217
- rve; Integrase core domain
-
XM_008761299.4 → XP_008759521.1 pogo transposable element with ZNF domain isoform X3
- UniProtKB/TrEMBL
- A0A8I6A9K5, A6K2T0
- Related
- ENSRNOP00000090463.1, ENSRNOT00000094202.2
- Conserved Domains (5) summary
-
- smart00674
Location:912 → 973
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:423 → 444
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:387 → 420
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam15273
Location:306 → 343
- NHS; NHS-like
- cl21549
Location:1047 → 1171
- rve; Integrase core domain
-
XM_039102346.2 → XP_038958274.1 pogo transposable element with ZNF domain isoform X4
- UniProtKB/TrEMBL
-
A0A8I5ZSI0
- Conserved Domains (5) summary
-
- PRK00404
Location:713 → 770
- tatB; Sec-independent protein translocase subunit TatB
- smart00674
Location:859 → 920
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:370 → 391
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:334 → 367
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cl21549
Location:1000 → 1111
- rve; Integrase core domain