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    RpS9 Ribosomal protein S9 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39108, updated on 9-Dec-2024

    Summary

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    Official Symbol
    RpS9provided by FlyBase
    Official Full Name
    Ribosomal protein S9provided by FlyBase
    Primary source
    FLYBASE:FBgn0010408
    Locus tag
    Dmel_CG3395
    See related
    AllianceGenome:FB:FBgn0010408
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG3395; chr3L:9483841..9483937; chr3L:9484246..9484474; Dmel\CG3395; Rp S9; RpL11; RPS9; S4; S9
    Summary
    A structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Located in cytosolic ribosome and nucleolus. Colocalizes with nuclear chromosome. Is expressed in adult brain cell body rind; adult head; adult heart; and organism. Orthologous to human RPS9 (ribosomal protein S9). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See RpS9 in Genome Data Viewer
    Location:
    67B11-67B11; 3-29 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (9509793..9511531, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (9502893..9504631, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene pathetic Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene antisense RNA:CR45874 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and expression of a Drosophila melanogaster cDNA encoding a putative ribosomal protein. Zhang N, et al. DNA Seq, 1993. PMID 8400363
    2. Diverse forms of RPS9 splicing are part of an evolving autoregulatory circuit. Plocik AM, et al. PLoS Genet, 2012. PMID 22479208, Free PMC Article
    3. Drosophila Ecp is a novel ribosome associated protein interacting with dRPL5. Wang D, et al. Biochim Biophys Acta, 2006 Sep. PMID 16870348
    4. Comparison of inter- and intraspecies variation in humans and fruit flies. Shih J, et al. Genom Data, 2015 Mar. PMID 26484147, Free PMC Article
    5. Drosophila RpS12 controls translation, growth, and cell competition through Xrp1. Ji Z, et al. PLoS Genet, 2019 Dec. PMID 31841522, Free PMC Article

    See all (82) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome HDA PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in cytoplasmic translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in ribosomal small subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ribosomal small subunit biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    colocalizes_with nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small-subunit processome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal protein S9
    Names
    CG3395-PA
    CG3395-PB
    CG3395-PD
    CG3395-PE
    RpS9-PA
    RpS9-PB
    RpS9-PD
    RpS9-PE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      9509793..9511531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001300079.1 → NP_001287008.1  ribosomal protein S9, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287008.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V1R4, P55935, Q6XIN2, Q9VT06, Q9VT07, Q9XZU5
      UniProtKB/TrEMBL
      C6SUW3
      Conserved Domains (1) summary
      PTZ00155
      Location:4 → 182
      PTZ00155; 40S ribosomal protein S9; Provisional

    2. NM_079280.4 → NP_524004.2  ribosomal protein S9, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_524004.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V1R4, P55935, Q6XIN2, Q9VT06, Q9VT07, Q9XZU5
      UniProtKB/TrEMBL
      C6SUW3
      Related
      FBpp0076152
      Conserved Domains (1) summary
      PTZ00155
      Location:4 → 182
      PTZ00155; 40S ribosomal protein S9; Provisional

    3. NM_168351.2 → NP_729507.1  ribosomal protein S9, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_729507.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95RG1
      Related
      FBpp0076153
      Conserved Domains (1) summary
      PTZ00155
      Location:4 → 137
      PTZ00155; 40S ribosomal protein S9; Provisional

    4. NM_168350.2 → NP_729506.1  ribosomal protein S9, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_729506.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V1R4, P55935, Q6XIN2, Q9VT06, Q9VT07, Q9XZU5
      UniProtKB/TrEMBL
      C6SUW3
      Related
      FBpp0076154
      Conserved Domains (1) summary
      PTZ00155
      Location:4 → 182
      PTZ00155; 40S ribosomal protein S9; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C6SUW3 C6SUW3
    P55935.2 P55935
    Q95RG1 Q95RG1

    Gene LinkOut

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