U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Polr1has RNA polymerase I subunit H, antisense [ Mus musculus (house mouse) ]

    Gene ID: 76416, updated on 9-Dec-2024

    Summary

    Official Symbol
    Polr1hasprovided by MGI
    Official Full Name
    RNA polymerase I subunit H, antisenseprovided by MGI
    Primary source
    MGI:MGI:1923666
    See related
    Ensembl:ENSMUSG00000036214 AllianceGenome:MGI:1923666
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Znrd1as; Znrd1-as; 1700022C21Rik
    Summary
    Orthologous to human POLR1HASP (POLR1H antisense, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 9.8), bladder adult (RPKM 2.8) and 13 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Polr1has in Genome Data Viewer
    Location:
    17 B1; 17 19.16 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (37269483..37276722)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (36958555..36965830)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory inhibitor subunit 11 Neighboring gene STARR-positive B cell enhancer ABC_E7532 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:37088519-37088789 Neighboring gene RNA polymerase I subunit H Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:37095409-37095518 Neighboring gene histocompatibility 2, M region locus 6, pseudogene Neighboring gene STARR-seq mESC enhancer starr_42496 Neighboring gene RIKEN cDNA 2410137M14 gene Neighboring gene histocompatibility 2, M region locus 4, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    putative uncharacterized protein ZNRD1-AS1
    Names
    T-complex testis-expressed protein 4
    ZNRD1 antisense RNA 1
    ZNRD1 antisense gene protein 1
    zinc ribbon domain containing 1, antisense

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368424.1NP_001355353.1  putative uncharacterized protein ZNRD1-AS1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK161503, BY706320, CR956641
      Consensus CDS
      CCDS89093.1
      UniProtKB/Swiss-Prot
      Q8R0E5, Q9DA28
      Related
      ENSMUSP00000134016.2, ENSMUST00000173814.2
    2. NM_001368425.1NP_001355354.1  putative uncharacterized protein ZNRD1-AS1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR956641
      Consensus CDS
      CCDS89093.1
      UniProtKB/Swiss-Prot
      Q8R0E5, Q9DA28
    3. NM_001368426.1NP_001355355.1  putative uncharacterized protein ZNRD1-AS1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      CR956641
      Consensus CDS
      CCDS89092.1
      UniProtKB/TrEMBL
      A0A1B0GRK2
      Related
      ENSMUSP00000147556.2, ENSMUST00000209623.2
    4. NM_029602.1NP_083878.1  putative uncharacterized protein ZNRD1-AS1 isoform 1

      See identical proteins and their annotated locations for NP_083878.1

      Status: VALIDATED

      Source sequence(s)
      BC027007
      Consensus CDS
      CCDS28731.1
      UniProtKB/TrEMBL
      A0A0R4J0L3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      37269483..37276722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250134.2XP_030105994.1  putative uncharacterized protein ZNRD1-AS1 isoform X1

      UniProtKB/Swiss-Prot
      Q8R0E5, Q9DA28