U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    3100003L05Rik RIKEN cDNA 3100003L05 gene [ Mus musculus (house mouse) ]

    Gene ID: 73076, updated on 22-Oct-2024

    Summary

    Official Symbol
    3100003L05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 3100003L05 geneprovided by MGI
    Primary source
    MGI:MGI:1920326
    See related
    Ensembl:ENSMUSG00000086254 AllianceGenome:MGI:1920326
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 3100003L05Rik in Genome Data Viewer
    Location:
    7 F3; 7 68.02 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (124224893..124308158, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (124625670..124708935, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_20107 Neighboring gene predicted gene, 23168 Neighboring gene STARR-seq mESC enhancer starr_20108 Neighboring gene STARR-seq mESC enhancer starr_20109 Neighboring gene STARR-seq mESC enhancer starr_20110 Neighboring gene STARR-seq mESC enhancer starr_20111 Neighboring gene STARR-seq mESC enhancer starr_20112 Neighboring gene predicted gene, 57516 Neighboring gene STARR-seq mESC enhancer starr_20113 Neighboring gene STARR-seq mESC enhancer starr_20114 Neighboring gene ER degradation enhancer, mannosidase alpha-like 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20115 Neighboring gene glutamate dehydrogenase, pseudogene Neighboring gene STARR-seq mESC enhancer starr_20116 Neighboring gene predicted gene, 30501

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045907.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122882, AK013926
      Related
      ENSMUST00000130240.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      124224893..124308158 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)